DATA

• RAW microscopy data (ZIP archive with TIFF files)
  • Case study videos (reduced size, few cells) https://ndownloader.figshare.com/files/10637359
    
  • Full videos https://ndownloader.figshare.com/files/10637362
• Tracks in the ground truth (ZIP archive with CSV files) https://ndownloader.figshare.com/files/10639546
• PNG snapshots https://ndownloader.figshare.com/files/10637707
• SQL dump database https://figshare.com/articles/SQL_Dump_of_the_database/5946472
• SQUARE test case (synthetic square moving along the y axis) https://ndownloader.figshare.com/files/10639639

CODE

Scripts to facilitate the usage of LTDB http://www.ltdb.info/downloads/scripts20180626.zip

• LTDBReadTracks.m - Reads tracks and dataset measures from track CSV files
• LTDBReadImages.m - Reads TIFF sequences in a 4D data structure
• LTDBExampleQuery.m - Example query for the LTDB SQL database
• LTDB2CTC.m - Converts tracks in the format used by the Cell Tracking Challenge
• LTDBCheck.m - Used to check for common tracking errors
• EstimateDSMeasures.m - Used to estimate SNR and other parameters
• XTLTDBImportTracks.m - Imports tracks as spots in Imaris

GitHub repository at https://github.com/IRB-LTDB/scripts